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Data/PresetImageFill2-12.jpg Data/PresetImageFill0-10.jpg Data/PresetImageFill1-11.jpg Data/PresetImageFill4-14.jpg Data/PresetImageFill3-13.jpg Data/PresetImageFill5-15.jpg Data/bullet_gbutton_gray-16.png Index/Document.iwa Index/ViewState.iwa Index/CalculationEngine.iwa Index/DocumentStylesheet-3545.iwa Index/AnnotationAuthorStorage.iwa Index/DocumentMetadata.iwa Index/Metadata.iwa Metadata/Properties.plist Metadata/DocumentIdentifier 64189F1D-103E-4B94-804B-62BA4D277BCD Metadata/BuildVersionHistory.plist docx M6.3. preview.jpg preview-micro.jpg preview-web.jpg #include <iostream> #include <vector> #include <string> #include <fstream> #include <cctype> #include <algorithm> using namespace std; string readFastaFile(string path); void readCsvFile(string path); string transcribe(string dnaString); vector<string> translate(string mrnaString); //global vector of vectors (2Dimensional vector) list vector<vector<string>> mycodons; string readFastaFile(string path) { string dnaString; fstream newfile; newfile.open(path,ios::in); // open a file to perform write operation using file object if(newfile.is_open()){ //checking whether the file is open string line; getline(newfile, line); while(getline(newfile, line)){ //read data from file object and put it into string. dnaString += line; } newfile.close(); //close the file object. } //cout << dnaString.substr(0,100)<< endl; return dnaString; } void readCsvFile(string path) { ifstream inFile; string codon,Abv, AAcode, name; inFile.open(path); //read the first entry as column headers getline ( inFile, codon, ',' ); getline ( inFile, Abv, ',' ); getline ( inFile, AAcode, ',' ); inFile >> name; while (!inFile.eof()) {//while we have not reached the end of file //read next entry getline ( inFile, codon, ',' ); getline ( inFile, Abv, ',' ); getline ( inFile, AAcode, ',' ); inFile >> name; vector<string> temp; codon.erase(std::remove_if(codon.begin(), codon.end(), ::isspace), codon.end());//clear from white space characters temp.push_back(codon); AAcode.erase(std::remove_if(AAcode.begin(), AAcode.end(), ::isspace), AAcode.end());//clear from white space characters temp.push_back(AAcode); // add a vector entry consisting of codon and AAcode mycodons.push_back(temp);//add the vector to mycodons 2D vector } } string findAA(string codon) { //search the AAcode for a specific codon for(int i = 0 ; i < mycodons.size(); i++){ if(mycodons[i][0] == codon){ return mycodons[i][1]; } } return ""; } //convert DNA string to mRNA string string transcribe(string dna_string){ // your code comes here } //search for codons in the mRNA string and convert them to equivalent AAcodes //each protein starts with AUG codon and ends with UAG, UGA or UAA codons //return the list of proteins as a vector vector<string> translate(string mrna_string) { // your code comes here } void print_protein_list(vector<string> list) { for(string line : list) { cout << line << endl; } cout << list.size() << " proteins listed" << endl; } int main() { string dnastring = readFastaFile("ecoli.fa"); readCsvFile("codon_table.csv"); string mrnastring = transcribe(dnastring); vector<string> protein_list = translate(mrnastring); print_protein_list(protein_list); return 0; }